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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50471684_50472397_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50471684 - 50472397
Intron Length:
714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCTTGTTTAAAA
Flanking Amino Acid:
CSLAVAMRMQNMVKNTERWI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1.1
82.6
29.8
Major BPS
84.6
0.86
1
74
41.2
Major PPT
65.6
0.35
1.1
60.7
43
Minor 5ss
32.6
-2
3.1
41.2
45.2
Minor BPS
60.6
0.33
1.9
71.99
40.5

Associated Gene:

Gene:
MTHFD1L
Ensembl Gene ID:
ENSAPLG00000010485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033739
50454266 - 50592559
138294
ENSAPLT00000010984
50453962 - 50592559
138598
ENSAPLT00000047959
50453962 - 50592559
138598
ENSAPLT00000047363
50454266 - 50592559
138294