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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50486669_50487906_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50486669 - 50487906
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGATGCAAATCT
Flanking Amino Acid:
PSQGPTFGVKGGAAGGGYAQ
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.1
38.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79.5
0.66
0.9
76.1
32.4
Minor 5ss
34
-1.8
2.9
41.6
45
Minor BPS
40.9
-0.6
2.4
62.5
46.9

Associated Gene:

Gene:
MTHFD1L
Ensembl Gene ID:
ENSAPLG00000010485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033739
50454266 - 50592559
138294
ENSAPLT00000010984
50453962 - 50592559
138598
ENSAPLT00000047959
50453962 - 50592559
138598
ENSAPLT00000047363
50454266 - 50592559
138294