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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50489204_50490102_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50489204 - 50490102
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAACT
Flanking Amino Acid:
ILHEGTQSDKALYNRLVPVV
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
100
1.24
0.5
100
0
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
86.7
1.23
1.4
101.6
23.6

Associated Gene:

Gene:
MTHFD1L
Ensembl Gene ID:
ENSAPLG00000010485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033739
50454266 - 50592559
138294
ENSAPLT00000010984
50453962 - 50592559
138598
ENSAPLT00000047959
50453962 - 50592559
138598
ENSAPLT00000047363
50454266 - 50592559
138294