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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50494197_50497414_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50494197 - 50497414
Intron Length:
3218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTTACA
Flanking Amino Acid:
ANTEKGFVRQAQFDIAVASE
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
65.1
0.47
1.8
80.31
35

Associated Gene:

Gene:
MTHFD1L
Ensembl Gene ID:
ENSAPLG00000010485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047363
50454266 - 50592559
138294
ENSAPLT00000033739
50454266 - 50592559
138294
ENSAPLT00000010984
50453962 - 50592559
138598
ENSAPLT00000047959
50453962 - 50592559
138598