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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50535645_50536065_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50535645 - 50536065
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGGTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAATTATTAAAC
Flanking Amino Acid:
VPVVVALNVFKTDSPAEVDL
Intron Amino Acid Position:
694

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
70
0.45
1.1
65.2
45.5
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
57.5
0.22
1.7
67.11
37.4

Associated Gene:

Gene:
MTHFD1L
Ensembl Gene ID:
ENSAPLG00000010485
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047363
50454266 - 50592559
138294
ENSAPLT00000033739
50454266 - 50592559
138294
ENSAPLT00000010984
50453962 - 50592559
138598
ENSAPLT00000047959
50453962 - 50592559
138598