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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50641432_50652411_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50641432 - 50652411
Intron Length:
10980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
GQQAEALGTDVEQTEHSSVI
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
AKAP12
Ensembl Gene ID:
ENSAPLG00000020224
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034315
50641182 - 50661667
20486
ENSAPLT00000022408
50641182 - 50661667
20486
ENSAPLT00000021514
50628939 - 50661667
32729
ENSAPLT00000021379
50628939 - 50657453
28515