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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50653288_50653401_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50653288 - 50653401
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTAATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
ATCCCTGTAATC
Flanking Amino Acid:
KEEKAEEDQEDSVNGELKAS
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
82.6
24.7
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
69
0.43
0.9
61.5
37.9
Minor 5ss
38.9
-1.3
2.9
49
47.2
Minor BPS
49.5
-0
2
61.51
38.6

Associated Gene:

Gene:
AKAP12
Ensembl Gene ID:
ENSAPLG00000020224
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034315
50641182 - 50661667
20486