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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50656194_50656966_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50656194 - 50656966
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CGATTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CCTTCTTTAAGG
Flanking Amino Acid:
DECIPEVQAAVQNETEDETS
Intron Amino Acid Position:
1346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
71.5
0.48
0.9
64.9
36.2
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
61.2
0.21
1.8
62.23
46.2

Associated Gene:

Gene:
AKAP12
Ensembl Gene ID:
ENSAPLG00000020224
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022408
50641182 - 50661667
20486
ENSAPLT00000021514
50628939 - 50661667
32729
ENSAPLT00000021379
50628939 - 50657453
28515
ENSAPLT00000034315
50641182 - 50661667
20486