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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50658890_50659511_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50658890 - 50659511
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTCTTCTTACTT
Flanking Amino Acid:
QNSLAPEALNMC*
Intron Amino Acid Position:
1986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
87.6
0.85
0.7
85.4
28
Minor 5ss
38.5
-1.3
2.8
50.4
39.2
Minor BPS
62.7
0.48
1.6
75.64
41.8

Associated Gene:

Gene:
AKAP12
Ensembl Gene ID:
ENSAPLG00000020224
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022408
50641182 - 50661667
20486