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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50702065_50703243_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50702065 - 50703243
Intron Length:
1179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
CCATTCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ACTGCAGTAACC
Flanking Amino Acid:
MQKIGELFALRHRINLSSDL
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
74.8
0.62
1
67
39.8
Major PPT
78.7
0.64
0.8
76.9
31.5
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
46.8
-0.2
2.3
61.52
43.8

Associated Gene:

Gene:
RMND1
Ensembl Gene ID:
ENSAPLG00000011834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012320
50700711 - 50719658
18948