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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50711391_50714294_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50711391 - 50714294
Intron Length:
2904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGATTTT
5'SS Class:
major
3'SS Sequence:
TGTTTCAAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATTTTGAACT
Flanking Amino Acid:
GYVEITSLPRDAANVLVIGT
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
81.2
33.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
63.7
0.31
1
57.7
42.3
Minor 5ss
44.1
-0.6
3.3
66.4
45.1
Minor BPS
65
0.55
1.4
76.98
39.7

Associated Gene:

Gene:
RMND1
Ensembl Gene ID:
ENSAPLG00000011834
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012320
50700711 - 50719658
18948