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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50721770_50722668_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50721770 - 50722668
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGCGTCCC
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AAATTTTGATCC
Flanking Amino Acid:
LPVPLSGRFKGSFAYFTIKD
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
56.9
42.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
28.5
-2.5
2.9
28
36
Minor BPS
47.6
-0.2
1.6
55.37
36.4

Associated Gene:

Gene:
ARMT1
Ensembl Gene ID:
ENSAPLG00000011927
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012416
50721624 - 50726944
5321