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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50722775_50723325_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50722775 - 50723325
Intron Length:
551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TCACTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTGTTCTTCACT
Flanking Amino Acid:
KNEFFEEHGEKGVEAEKRAI
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
80
0.68
0.9
77.5
35.2
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
71.2
0.75
1.7
87.1
39

Associated Gene:

Gene:
ARMT1
Ensembl Gene ID:
ENSAPLG00000011927
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012416
50721624 - 50726944
5321