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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50723568_50725009_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50723568 - 50725009
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTACTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AGTATGTTAATA
Flanking Amino Acid:
YRRIHAALAQNPPIDNFDVF
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76.9
0.6
0.8
74.3
35.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
49.7
-0
2
62.73
37.7

Associated Gene:

Gene:
ARMT1
Ensembl Gene ID:
ENSAPLG00000011927
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012416
50721624 - 50726944
5321