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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50748480_50753471_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
50748480 - 50753471
Intron Length:
4992

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGA|GCAAAATGC
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTGAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
ENCELKEKLHDKYLNECEES
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.3
0.05
1.3
50.8
42.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
67.1
0.39
1
67.7
42.7
Minor 5ss
28.6
-2.5
4.1
37.6
41.4
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
CCDC170
Ensembl Gene ID:
ENSAPLG00000011938
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012426
50744390 - 50780236
35847