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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50753617_50755438_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50753617 - 50755438
Intron Length:
1822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTATG
5'SS Class:
strong_major
3'SS Sequence:
ATTATCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ACTATTTGAATT
Flanking Amino Acid:
EKPQEHLMSKVCEICKENLA
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
79.8
35.1
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
75.7
0.58
0.9
67.3
39.6
Minor 5ss
34
-1.8
2.8
42.1
44.6
Minor BPS
53.6
0.19
1.4
67.12
38.2

Associated Gene:

Gene:
CCDC170
Ensembl Gene ID:
ENSAPLG00000011938
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012426
50744390 - 50780236
35847