About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50755625_50766568_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
50755625 - 50766568
Intron Length:
10944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TGTGTATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTTTGAAACT
Flanking Amino Acid:
YYQDMEKLSKDLDSARIARQ
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.6
0.51
0.9
70.3
40.3
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
47.6
-0.1
2.2
70.42
41

Associated Gene:

Gene:
CCDC170
Ensembl Gene ID:
ENSAPLG00000011938
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012426
50744390 - 50780236
35847