Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50773620_50774740_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

50773620 - 50774740

Intron Length:

1121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCATAAAACCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATATTTTTAAAT

Flanking Amino Acid:

KTMAYSLRRKLKTQKEKLES

Intron Amino Acid Position:

481

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

83.2

30.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

0.25

1.1

53.5

Minor 5ss

38.7

-1.3

2.8

48.1

47.6

Minor BPS

69.2

0.68

1.3

80.13

35.2

Associated Gene:

Gene:

CCDC170

Ensembl Gene ID:

ENSAPLG00000011938

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012426

50744390 - 50780236

35847