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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50821156_50823180_R

Intron Information:

Intron Rank:
134168
Intron Class:
major
Intron Phase:
Intron Coordinates:
50821156 - 50823180
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTGCTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
TTGGAATGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
79.6
0.67
0.8
77.4
36.9
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
38.9
-0.7
2.2
58.7
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019477
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034602
50811071 - 50874673
63603
ENSAPLT00000031315
50811967 - 50874673
62707
ENSAPLT00000019499
50811967 - 50874673
62707