Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50823258_50874496_R

Intron Information:

Intron Rank:

134173

Intron Class:

major

Intron Phase:

Intron Coordinates:

50823258 - 50874496

Intron Length:

51239

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGCACT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCTGTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTAATTTTACTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

75.3

40.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

79.7

0.67

0.9

80.3

31.8

Minor 5ss

41.6

-0.9

2.9

45.2

Minor BPS

52.4

0.06

1.6

62.9

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031315

50811967 - 50874673

62707