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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50958821_50976771_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50958821 - 50976771
Intron Length:
17951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
GGTATTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TCCCCCTTGATG
Flanking Amino Acid:
LLFAPNLLLDRNQGKCVEGM
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
65
0.34
1
58
42.3
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
61.6
0.22
1.4
59.62
42.8

Associated Gene:

Gene:
ESR1
Ensembl Gene ID:
ENSAPLG00000004585
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004741
50874694 - 50985278
110585