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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50976906_50983500_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
50976906 - 50983500
Intron Length:
6595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAC
U12 Branch Point Sequence:
TCCTCCCTACTC
Flanking Amino Acid:
CLKSIILLNSGVYTFLSSTL
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
48.5
-0
1.3
46.3
38.4
Major PPT
75
0.56
0.8
65.9
34.5
Minor 5ss
34.5
-1.8
3.3
46.4
44.2
Minor BPS
49.7
-0
2
62.3
43.8

Associated Gene:

Gene:
ESR1
Ensembl Gene ID:
ENSAPLG00000004585
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004741
50874694 - 50985278
110585