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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_50983685_50985043_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
50983685 - 50985043
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTAAAACCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTAAAA
Flanking Amino Acid:
LLILSHIRHMSNKGMEHLYN
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
63.7
0.31
1
55.2
39.8
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
68.8
0.59
1.7
79.32
35.9

Associated Gene:

Gene:
ESR1
Ensembl Gene ID:
ENSAPLG00000004585
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004741
50874694 - 50985278
110585