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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51000348_51006749_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51000348 - 51006749
Intron Length:
6402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTAT
5'SS Class:
major
3'SS Sequence:
CTTCTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TCTTATTCACCT
Flanking Amino Acid:
PGPSVSSPHSRSIRGGSGSS
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
75.1
37.7
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
88.2
0.86
0.6
87.5
22.7
Minor 5ss
46.3
-0.4
2.9
67
44.3
Minor BPS
49.3
0.03
2
72.74
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046126
51000107 - 51040038
39932
ENSAPLT00000041159
51000107 - 51020553
20447
ENSAPLT00000046694
51000107 - 51040038
39932