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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51006809_51008640_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51006809 - 51008640
Intron Length:
1832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAATTTCA
5'SS Class:
major
3'SS Sequence:
TCATTGCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTTCTTTACCC
Flanking Amino Acid:
GRSTPSRQRTPRGKCSLSQP
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
70.8
35.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
63.8
0.31
1.1
58.9
40.9
Minor 5ss
41
-1
2.7
51.6
44.8
Minor BPS
69.8
0.6
1.6
77.59
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046694
51000107 - 51040038
39932
ENSAPLT00000046126
51000107 - 51040038
39932
ENSAPLT00000041159
51000107 - 51020553
20447