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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51009392_51010591_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
51009392 - 51010591
Intron Length:
1200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGCTA
5'SS Class:
major
3'SS Sequence:
GCACTTGCAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAATTTTTAAAA
Flanking Amino Acid:
ILQDHHRLLMQIRRELLESQ
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
62.3
43.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
56.1
0.14
1
50.7
37.9
Minor 5ss
33.1
-1.9
3.6
43.3
46.3
Minor BPS
59.1
0.28
1.4
62.02
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046694
51000107 - 51040038
39932
ENSAPLT00000046126
51000107 - 51040038
39932
ENSAPLT00000041159
51000107 - 51020553
20447