About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51010721_51011076_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51010721 - 51011076
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTACT
5'SS Class:
major
3'SS Sequence:
TCATCCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACATTATTAAAA
Flanking Amino Acid:
SLQDALMQCQDFHEMSHGLL
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.3
77.1
37.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
79.7
0.67
0.8
73.5
31.2
Minor 5ss
39.9
-1.1
2.5
52.8
43.8
Minor BPS
52.4
0.07
1.7
60.92
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041159
51000107 - 51020553
20447
ENSAPLT00000046694
51000107 - 51040038
39932
ENSAPLT00000046126
51000107 - 51040038
39932