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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51013018_51014180_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51013018 - 51014180
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCTTTCTGAACT
Flanking Amino Acid:
NLNSTETQTAGVIDRWELIQ
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.2
0.75
0.9
74.6
39.8
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
76.1
0.9
1.3
88.41
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046694
51000107 - 51040038
39932
ENSAPLT00000046126
51000107 - 51040038
39932
ENSAPLT00000041159
51000107 - 51020553
20447