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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51017755_51020523_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
51017755 - 51020523
Intron Length:
2769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGAAGA
5'SS Class:
major
3'SS Sequence:
AGAATCTAGTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
MVANLCPVLSLEAHILQLDK
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
65.8
40
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
43
-0.4
1.7
44.2
46.1
Minor 5ss
35
-1.7
3
46.2
42.8
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041159
51000107 - 51020553
20447