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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51017769_51019648_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51017769 - 51019648
Intron Length:
1880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCACT
5'SS Class:
major
3'SS Sequence:
TTTTTTGATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGTTTATTT
Flanking Amino Acid:
LTENALKNFSGESSELEAHI
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
68
42.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.8
0.78
0.9
80.6
36.1
Minor 5ss
40.8
-1
3.2
55
43.4
Minor BPS
60.4
0.41
2
83.14
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046694
51000107 - 51040038
39932