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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51029340_51031162_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51029340 - 51031162
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CATTCCTTAATT
Flanking Amino Acid:
ICAMSMERRLKIEETWRLWQ
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
82.1
0.72
0.9
76.9
37
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
83.9
1.14
1
89.11
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046694
51000107 - 51040038
39932
ENSAPLT00000046126
51000107 - 51040038
39932