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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51031351_51036299_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51031351 - 51036299
Intron Length:
4949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTATCTTAAGA
Flanking Amino Acid:
EIQRKLNEQQELQRDIEKHS
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.2
0.75
0.8
77
30.6
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
69.5
0.61
1.6
79.58
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046694
51000107 - 51040038
39932
ENSAPLT00000046126
51000107 - 51040038
39932