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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51036463_51039946_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51036463 - 51039946
Intron Length:
3484

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TGTTTTTTTACA
Flanking Amino Acid:
DLPDCNCDITRVKKLKETLV
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
1
74.7
38.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
28
-2.5
4
42.5
44.6
Minor BPS
65.3
0.48
1.6
75.28
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017771
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046694
51000107 - 51040038
39932
ENSAPLT00000046126
51000107 - 51040038
39932