About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51071497_51071541_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
51071497 - 51071541
Intron Length:
45

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCTAAATCA
5'SS Class:
weak_major
3'SS Sequence:
TACTGGGAACCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
CTGTCCTCAGTA
Flanking Amino Acid:
LFSVIFKRSGSPQTEEGGYS
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.5
49.7
35.4
Major BPS
71.6
0.54
1
72
33.1
Major PPT
52.9
0.07
1.1
43.9
45.6
Minor 5ss
26
-2.8
3.9
36.7
40.3
Minor BPS
52.2
0.06
1.8
63.31
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037380
51071438 - 51086628
15191