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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51076882_51077275_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51076882 - 51077275
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
ATCACCATACGT
Flanking Amino Acid:
RGVELEYILETWMHLDEDYQ
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
70.5
0.51
1
72
33.1
Major PPT
84.9
0.79
0.7
80.8
31.2
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
44.6
-0.3
2.1
63.83
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037380
51071438 - 51086628
15191