Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51077450_51078128_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51077450 - 51078128

Intron Length:

679

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATC

5'SS Class:

strong_major

3'SS Sequence:

CCAAACTTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

ACATCCAAACTT

Flanking Amino Acid:

EVQLLLDKHKEYFQGLESHM

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

25.3

Major BPS

73.8

0.59

1.3

72.8

Major PPT

65.7

0.35

0.9

61.2

39.4

Minor 5ss

-1.3

3.1

51.9

44.9

Minor BPS

43.6

-0.4

2.1

59.69

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019803

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037380

51071438 - 51086628

15191