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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51080846_51082418_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51080846 - 51082418
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAACA
5'SS Class:
major
3'SS Sequence:
TTTTCAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATGATTTAATT
Flanking Amino Acid:
AEKPETEQMQVILQAEEGLK
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
68.9
35.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.2
0.61
0.9
71.2
37.7
Minor 5ss
39.9
-1.1
2.7
50.5
45.4
Minor BPS
58.6
0.35
1.6
72.28
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037380
51071438 - 51086628
15191