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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51082521_51083984_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51082521 - 51083984
Intron Length:
1464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TTTTCTATAATT
Flanking Amino Acid:
DRLQEIVTFKNDLKILFTSL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.2
37.1
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
78.8
0.65
0.8
73.7
31.5
Minor 5ss
45.8
-0.4
2.9
65.2
46
Minor BPS
75.9
0.89
1.5
92.75
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037380
51071438 - 51086628
15191