About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51084195_51084892_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
51084195 - 51084892
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTACAAAATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTTTCTACAAAA
Flanking Amino Acid:
ETEIYLSKQESLAKEIKEIT
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
59.9
0.22
1.1
57.4
41.3
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
54.5
0.14
1.9
74.18
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019803
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037380
51071438 - 51086628
15191