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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51112991_51114188_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51112991 - 51114188
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AGACACTTGATT
Flanking Amino Acid:
TAIQQCNIMQEAVVQYEQYE
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
91.7
21.4
Major BPS
100
1.24
0.5
100
0
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
25.9
-2.8
4.1
39.9
46.1
Minor BPS
52.6
0.16
1.5
65.75
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027425
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018882
51105885 - 51119278
13394