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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51116996_51120359_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
51116996 - 51120359
Intron Length:
3364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAAATTT
5'SS Class:
major
3'SS Sequence:
ATAAACTTGCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TGAGTATAAACT
Flanking Amino Acid:
QFKAYQVIIVKICMKKDYPK
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1
65.7
34
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
49.4
-0
1.2
46
45
Minor 5ss
40.4
-1.1
3.4
61.7
44.2
Minor BPS
47.2
-0.1
2
66.22
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017874
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021865
51116942 - 51125497
8556