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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51122388_51124099_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51122388 - 51124099
Intron Length:
1712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCGCACTGATTT
Flanking Amino Acid:
DIAQAKLEQKILGEELDSCN
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
83.1
0.74
0.8
77.7
36.7
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
44.7
-0.3
1.8
59.2
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017874
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021865
51116942 - 51125497
8556