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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51124253_51125386_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51124253 - 51125386
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGTTACTGAATT
Flanking Amino Acid:
GLALVTVQDQIQTKEKETQH
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.7
0.58
1.1
72.2
42.7
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
60.5
0.41
1.7
76.07
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017874
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021865
51116942 - 51125497
8556