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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51201619_51202628_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51201619 - 51202628
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCACT
5'SS Class:
major
3'SS Sequence:
TTCATTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTGTATTAATA
Flanking Amino Acid:
SLSSELDQTKELSKHAEAMT
Intron Amino Acid Position:
1385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
69.9
40.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.6
0.8
0.8
79.9
32.1
Minor 5ss
48.2
-0.2
2.5
67.7
42.9
Minor BPS
59.2
0.29
1.7
70.26
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108