About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51206851_51208085_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51206851 - 51208085
Intron Length:
1235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCTTA
5'SS Class:
major
3'SS Sequence:
GATTCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATGTTTTGATT
Flanking Amino Acid:
KYEQFKSSVGEIRQHINKQG
Intron Amino Acid Position:
1168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.1
37.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.4
0.57
0.9
68.9
36.8
Minor 5ss
41.5
-0.9
3
47.1
48.3
Minor BPS
61.1
0.43
1.3
74.42
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108