About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51208195_51208962_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
51208195 - 51208962
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTTAGCC
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GATGTTTTATTT
Flanking Amino Acid:
HSDTWKGYKNRFSELANWIS
Intron Amino Acid Position:
1131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1
57.5
33.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
32.4
-2
3.2
42.6
44.5
Minor BPS
49.5
0.05
1.6
64.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108