About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51209172_51209487_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51209172 - 51209487
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGAACT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTATTGAATT
Flanking Amino Acid:
GKERMIEEHMLFFGDKGSYH
Intron Amino Acid Position:
1062

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
72.6
36.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
79.8
0.67
0.8
79.2
28
Minor 5ss
42.3
-0.8
2.8
56
42.3
Minor BPS
61.9
0.45
1.6
79.19
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108