Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51210678_51211247_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51210678 - 51211247

Intron Length:

570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTACA

5'SS Class:

major

3'SS Sequence:

ACTTCAAACTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TTCACTTCAAAC

Flanking Amino Acid:

NPEELLRKHSEFFNQLDQRV

Intron Amino Acid Position:

964

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

69.7

36.3

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

0.31

60.3

Minor 5ss

32.6

-2

2.7

35.6

40.5

Minor BPS

53.1

0.08

1.7

64.63

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006495

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039438

51207902 - 51230613

22712

ENSAPLT00000006751

51201436 - 51258543

57108