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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51215728_51217152_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51215728 - 51217152
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGGT
5'SS Class:
major
3'SS Sequence:
TACATTTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACTTTACAT
Flanking Amino Acid:
WRELFMQVKQYARADELDKM
Intron Amino Acid Position:
706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
71.6
38.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.9
0.58
0.8
73.9
36.3
Minor 5ss
42.2
-0.9
3.2
57.5
41.6
Minor BPS
61.8
0.45
1.8
81.86
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108
ENSAPLT00000006745
51213390 - 51258543
45154
ENSAPLT00000039438
51207902 - 51230613
22712