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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_51219455_51220874_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51219455 - 51220874
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCATGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATAAACTTAAAT
Flanking Amino Acid:
AEVYAKANGSVEEVENVMKF
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.2
0.48
1
70.1
40.1
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
59.7
0.38
1.7
75.23
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006495
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006751
51201436 - 51258543
57108
ENSAPLT00000006745
51213390 - 51258543
45154
ENSAPLT00000039438
51207902 - 51230613
22712